The central purpose of Microbiome is to unite investigators conducting microbiome research in environmental, agricultural, and biomedical arenas.Topics broadly addressing the study of microbial communities, such as, microbial surveys, bioinformatics, meta-omics approaches and community/host interaction modeling will be considered for publication. Through this collection of literature Microbiome hopes to integrate researchers with common scientific objectives across a broad cross-section of sub-disciplines within microbial ecology.
《微生物组学》的主要目的是联合环境、农业和生物医学领域的微生物组学研究人员。主要内容包括微生物调查、生物信息学、元组学方法和群落/宿主相互作用模型等。通过这些文献的收集，微生物组希望将研究人员与共同的科学目标整合在一个广泛的跨部门的微生物生态学的子学科。
Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0637-2
Longitudinal investigation of the swine gut microbiome from birth to market reveals stage and growth performance associated bacteria
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0721-7
Understanding microbial community dynamics to improve optimal microbiome selection
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0702-x
Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0699-1
Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0689-3
Alterations in the gut microbiome and metabolism with coronary artery disease severity
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0683-9
Maize synthesized benzoxazinoids affect the host associated microbiome
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0677-7
Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0645-2
Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0668-8
CAMISIM: simulating metagenomes and microbial communities
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0633-6
Interactions between a pathogenic Blastocystis subtype and gut microbiota: in vitro and in vivo studies
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0644-3
Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0749-8
Host immunoglobulin G selectively identifies pathobionts in pediatric inflammatory bowel diseases
来源期刊：MicrobiomeDOI：10.1186/s40168-018-0604-3
Evidence for an association of gut microbial Clostridia with brain functional connectivity and gastrointestinal sensorimotor function in patients with irritable bowel syndrome, based on tripartite network analysis
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0656-z
Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0717-3
Microbial indicators of environmental perturbations in coral reef ecosystems
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0705-7
Diversities and potential biogeochemical impacts of mangrove soil viruses
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0675-9
Advancing functional and translational microbiome research using meta-omics approaches
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0767-6
Diet-induced remission in chronic enteropathy is associated with altered microbial community structure and synthesis of secondary bile acids
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0740-4
Microbiome of vineyard soils is shaped by geography and management
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0758-7
Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera
来源期刊：MicrobiomeDOI：10.1186/s40168-018-0616-z
Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0661-2
Haem iron reshapes colonic luminal environment: impact on mucosal homeostasis and microbiome through aldehyde formation
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0685-7
Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0730-6
Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0673-y
Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0623-8
A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0714-6
Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0665-y
Discordant transmission of bacteria and viruses from mothers to babies at birth
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0766-7
The human gallbladder microbiome is related to the physiological state and the biliary metabolic profile
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0712-8
Dynamic interaction network inference from longitudinal microbiome data
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0660-3
Seasonal dynamics of DNA and RNA viral bioaerosol communities in a daycare center
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0672-z
Ochratoxin A induces liver inflammation: involvement of intestinal microbiota
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0761-z
The subway microbiome: seasonal dynamics and direct comparison of air and surface bacterial communities
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0772-9
Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua)
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0681-y
Bacterial alkylquinolone signaling contributes to structuring microbial communities in the ocean
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0711-9
Coupling growth kinetics modeling with machine learning reveals microbial immigration impacts and identifies key environmental parameters in a biological wastewater treatment process
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0682-x
Impacts of florfenicol on the microbiota landscape and resistome as revealed by metagenomic analysis
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0773-8
Batch effect exerts a bigger influence on the rat urinary metabolome and gut microbiota than uraemia: a cautionary tale
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0738-y
The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0753-z
Quantifying the contribution of microbial immigration in engineered water systems
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0760-0
Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0695-5
A conceptual framework for the phylogenetically constrained assembly of microbial communities
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0754-y
Wd∗$W_{d}^{*}$-test: robust distance-based multivariate analysis of variance
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0659-9
Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0680-z
Correction to: Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant
来源期刊：MicrobiomeDOI：10.1186/s40168-018-0617-y
Mining traits for the enrichment and isolation of not-yet-cultured populations
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0708-4
Antibiotic-modulated microbiome suppresses lethal inflammation and prolongs lifespan in Treg-deficient mice
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0751-1
2017 NIH-wide workshop report on “The Human Microbiome: Emerging Themes at the Horizon of the 21st Century”
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0627-4
Correction to: Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya
来源期刊：MicrobiomeDOI：10.1186/s40168-019-0655-0
