PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery.Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines.Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights.Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology.Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
PLOS计算生物学的特色是通过计算方法的应用,在所有尺度上加深我们对生命系统的理解--从分子和细胞,到病人群体和生态系统。读者包括生命科学家和计算科学家,他们可以将这里呈现的重要发现带入下一个发现层次。研究文章必须声明为属于相关章节。有关各章节的更多信息,请参阅提交指南。研究论文应模拟生物系统的各个方面,展示方法和科学的新奇,并提供深刻的新生物学见解。一般而言,通过计算进行生物学发现的可靠性和重要性应通过实验研究进行验证和丰富。出版物不要求包含实验验证,但应尽可能引用。通过计算对适度的生物学发现进行实验验证并不能使手稿适合PLOS计算生物学。专门指定为方法论文的研究文章应该描述已经证明的特别重要的杰出方法,或者有希望提供新的生物学见解。该方法必须已经被广泛采用,或者有被广大用户广泛采用的承诺。只有在现有已发布方法的增强功能带来新的卓越功能时,才会考虑对这些方法进行增强。
A spectrum of routing strategies for brain networks
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006833
Ensemble of decision tree reveals potential miRNA-disease associations
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007209
Multi-study inference of regulatory networks for more accurate models of gene regulation
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006591
Finding driver mutations in cancer: Elucidating the role of background mutational processes
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006981
Kinetic and thermodynamic insights into sodium ion translocation through the μ-opioid receptor from molecular dynamics and machine learning analysis
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006689
Neural control of body-plan axis in regenerating planaria
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006904
TASmania: A bacterial Toxin-Antitoxin Systems database
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006946
Ten simple rules towards healthier research labs
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006914
Neural crest streaming as an emergent property of tissue interactions during morphogenesis
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007002
Open collaborative writing with Manubot
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007128
Transitions in information processing dynamics at the whole-brain network level are driven by alterations in neural gain
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006957
SPINDLE: End-to-end learning from EEG/EMG to extrapolate animal sleep scoring across experimental settings, labs and species
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006968
From space to time: Spatial inhomogeneities lead to the emergence of spatiotemporal sequences in spiking neuronal networks
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007432
Efficient neural decoding of self-location with a deep recurrent network
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006822
Sequential exploration in the Iowa gambling task: Validation of a new computational model in a large dataset of young and old healthy participants
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006989
A novel network control model for identifying personalized driver genes in cancer
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007520
Stochastic neural field model of stimulus-dependent variability in cortical neurons
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006755
Mathematical modelling reveals unexpected inheritance and variability patterns of cell cycle parameters in mammalian cells
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007054
Forecasting national and regional influenza-like illness for the USA
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007013
Perspective: Dimensions of the scientific method
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007279
Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007207
Genotype-phenotype relations of the von Hippel-Lindau tumor suppressor inferred from a large-scale analysis of disease mutations and interactors
来源期刊:PLoS Computational BiologyDOI:10.1371/JOURNAL.PCBI.1006478
STRFs in primary auditory cortex emerge from masking-based statistics of natural sounds
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006595
An integrative transcriptome analysis framework for drug efficacy and similarity reveals drug-specific signatures of anti-TNF treatment in a mouse model of inflammatory polyarthritis
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006933
The intrinsic dimension of protein sequence evolution
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006767
Evidence accumulation is biased by motivation: A computational account
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007089
Predicting gastrointestinal drug effects using contextualized metabolic models
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007100
DoGNet: A deep architecture for synapse detection in multiplexed fluorescence images
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007012
FAMoS: A Flexible and dynamic Algorithm for Model Selection to analyse complex systems dynamics
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007230
Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007268
Ten quick tips for using a Raspberry Pi
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006959
State-aware detection of sensory stimuli in the cortex of the awake mouse
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006716
Evaluation of linear and non-linear activation dynamics models for insect muscle
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007437
Constrained inference in sparse coding reproduces contextual effects and predicts laminar neural dynamics
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007370
Key residues in TLR4-MD2 tetramer formation identified by free energy simulations
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007228
Stochasticity of replication forks’ speeds plays a key role in the dynamics of DNA replication
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007519
Categorical encoding of decision variables in orbitofrontal cortex
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006667
Correction: Generation of Binary Tree-Child phylogenetic networks
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007440
TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007293
Integrative modeling of the HIV-1 ribonucleoprotein complex
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007150
Leveraging heterogeneity for neural computation with fading memory in layer 2/3 cortical microcircuits
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006781
Executable pathway analysis using ensemble discrete-state modeling for large-scale data
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007317
A Bayesian framework for the analysis of systems biology models of the brain
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006631
Correction: Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007136
Correction: Frontal cortex tracks surprise separately for different sensory modalities but engages a common inhibitory control mechanism
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007420
Integrated computational and Drosophila cancer model platform captures previously unappreciated chemicals perturbing a kinase network
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1006878
Coding Locations Relative to One or Many Landmarks in Childhood
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007380
Correction: Atrial arrhythmogenicity of KCNJ2 mutations in short QT syndrome: Insights from virtual human atria
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007145
Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007219
Correction: Comprehensively benchmarking applications for detecting copy number variation
来源期刊:PLoS Computational BiologyDOI:10.1371/journal.pcbi.1007367