Molecular Phylogenetics and Evolution is dedicated to bringing Darwin's dream within grasp - to "have fairly true genealogical trees of each great kingdom of Nature." The journal provides a forum for molecular studies that advance our understanding of phylogeny and evolution, further the development of phylogenetically more accurate taxonomic classifications, and ultimately bring a unified classification for all the ramifying lines of life. Phylogeographic studies will be considered for publication if they offer EXCEPTIONAL theoretical or empirical advances.
分子系统发育和进化致力于将达尔文的梦想带入掌握之中-“拥有每个伟大自然王国的相当真实的家谱树”。该杂志为分子研究提供了一个论坛，以促进我们对系统发育和进化的理解，进一步发展系统发育更准确的分类学分类，并最终为所有分系的生命带来统一的分类。如果系统地理学研究提供了非凡的理论或经验进展，则将考虑发表。
Incongruence between gene trees and species trees and phylogenetic signal variation in plastid genes.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.05.022
Insight from an ultraconserved element bait set designed for hemipteran phylogenetics integrated with genomic resources.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.10.026
What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data?
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.10.008
Genetic Analysis and Evolutionary Changes of Porcine Circovirus 2.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106520
A fossil-calibrated phylogenomic analysis of Daphnia and the Daphniidae.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.05.018
Phylogenomic interrogation resolves the backbone of the Pseudoscorpiones Tree of Life.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.05.023
Fish diversification at the pace of geomorphological changes: evolutionary history of western Iberian Leuciscinae (Teleostei: Leuciscidae) inferred from multilocus sequence data.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.12.020
Phylogeny and species delimitation of near Eastern Neurergus newts (Salamandridae) based on genome-wide RADseq data analysis.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.01.003
A multigene timescale and diversification dynamics of Ciliophora evolution.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106521
From seascape ecology to population genomics and back. Spatial and ecological differentiation among cryptic species of the red algae Lithophyllum stictiforme/L. cabiochiae, main bioconstructors of coralligenous habitats.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.04.005
Land bridges in the Pleistocene contributed to flora assembly on the continental islands of South China: Insights from the evolutionary history of Quercus championii.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.11.021
Diversification and historical demography of the rapid racerunner (Eremias velox) in relation to geological history and Pleistocene climatic oscillations in arid Central Asia.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.10.029
Huntsmen of the Caribbean: Multiple tests of the GAARlandia hypothesis.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.09.017
Wolbachia symbionts in mosquitoes: Intra- and intersupergroup recombinations, horizontal transmission and evolution.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.01.020
The complex study of complexes: The first well-supported phylogeny of two species complexes within genus Caridina (Decapoda: Caridea: Atyidae) sheds light on evolution, biogeography, and habitat.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.11.002
Multiple new species: Cryptic diversity in the widespread mite species Cymbaeremaeus cymba (Oribatida, Cymbaeremaeidae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.03.008
Phylogenetic relationships and divergence dating in the Glass Lizards (Anguinae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.12.022
Integrating phylogenomics, phylogenetics, morphometrics, relative genome size and ecological niche modelling disentangles the diversification of Eurasian Euphorbia seguieriana s. l. (Euphorbiaceae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.10.046
Convergent evolution misled taxonomy in schizothoracine fishes (Cypriniformes: Cyprinidae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.01.008
Integrating multilocus DNA data and 3D geometric morphometrics to elucidate species boundaries in the case of Pyrenaearia (Pulmonata: Hygromiidae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.12.007
Molecular phylogeny of the Pectinoidea (Bivalvia) indicates Propeamussiidae to be a non-monophyletic family with one clade sister to the scallops (Pectinidae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.05.006
Usual alga from unusual habitats: Biodiversity of Klebsormidium (Klebsormidiophyceae, Streptophyta) from the phylogenetic superclade G isolated from biological soil crusts.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.12.018
Phylogenetic relationships within Parianinae (Poaceae: Bambusoideae: Olyreae) with emphasis on Eremitis: evidence from nuclear and plastid DNA sequences, macromorphology, and pollen ectexine patterns.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106541
Molecular phylogenetics and floral evolution of the Cirrhopetalum alliance (Bulbophyllum, Orchidaceae): evolutionary transitions and phylogenetic signal variation.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106689
Phylogeography of the Rufous Vanga and the role of bioclimatic transition zones in promoting speciation within Madagascar.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106535
Evolution and functional classification of mammalian copper amine oxidases.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106571
Complete subspecies-level phylogeny of the Oriolidae (Aves: Passeriformes): Out of Australasia and return.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.03.015
High extinction rates and non-adaptive radiation explains patterns of low diversity and extreme morphological disparity in North American blister beetles (Coleoptera, Meloidae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2018.09.014
Contrasting phylogeographic histories between the continent and islands of East Asia: Massive mitochondrial introgression and long-term isolation of hares (Lagomorpha: Lepus).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.04.003
Role of geography and climatic oscillations in governing into-India dispersal of freshwater snails of the family: Viviparidae.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.05.027
Biogeographical, ecological, and phylogenetic analyses clarifying the evolutionary history of Calibrachoa in South American grasslands.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106614
Phylogenetic relationships and systematics of the Amazonian poison frog genus Ameerega using ultraconserved genomic elements.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106638
Diversification of Biscutella ser. Biscutella (Brassicaceae) followed post-Miocene geologic and climatic changes in the Mediterranean basin.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106644
Putting keyhole limpets on the map: phylogeny and biogeography of the globally distributed marine family Fissurellidae (Vetigastropoda, Mollusca).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.02.008
Multiple auto- and allopolyploidisations marked the Pleistocene history of the widespread Eurasian steppe plant Astragalus onobrychis (Fabaceae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106572
New insights from nuclear and mitochondrial markers on the genetic diversity and structure of the Indian white shrimp Fenneropenaeus indicus among the marginal seas in the Indian Ocean.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.04.007
Phylogenomics disentangles the evolutionary history of spruces (Picea) in the Qinghai-Tibetan Plateau: implications for the design of population genetic studies and species delimitation of conifers.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106612
Frozen Antarctic path for dispersal initiated parallel host-parasite evolution on different continents.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.02.023
Phylogenetic implications of mitogenome rearrangements in East Asian potamiscine freshwater crabs (Brachyura: Potamidae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106669
Scratching the surface of subterranean biodiversity: molecular analysis reveals a diverse and previously unknown fauna of Parabathynellidae (Crustacea: Bathynellacea) from the Pilbara, Western Australia.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106643
Phylotranscriptomics resolves interspecific relationships and indicates multiple historical out-of-North America dispersals through the Bering Land Bridge for the genus Picea (Pinaceae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106610
Origin and evolution of the genus Piper in Peninsular India.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.05.033
A new evolutionary model for the vertebrate actin family including two novel groups.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106632
An exhaustive phylogeny of the combtooth blenny genus Salaria (Pisces, Blenniidae) shows introgressive hybridization and lack of reciprocal mtDNA monophyly between the marine species Salaria basilisca and Salaria pavo.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.02.026
Reassessing the role of morphology in bryophyte phylogenetics: combined data improves phylogenetic inference despite character conflict.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106662
Bayesian phylogenetic analysis of the influenza-A virus genomes isolated in Tunisia, and determination of potential recombination events.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.01.019
Insights into the molecular phylogeny of Rhaphidophoridae, an ancient, worldwide lineage of Orthoptera.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.05.032
Species delimitation and evolutionary reconstruction within an integrative taxonomic framework: a case study on Rhinolophus macrotis complex (Chiroptera: Rhinolophidae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106544
The family of amphioxus chitin synthases offers insight into the evolution of chitin formation in chordates.
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106691
Multilocus data reveal deep phylogenetic relationships and intercontinental biogeography of the Eurasian-North American genus Corylus (Betulaceae).
来源期刊：Molecular phylogenetics and evolutionDOI：10.1016/j.ympev.2019.106658
