GigaScience aims to revolutionize data dissemination, organization, understanding, and use. An online open-access open-data journal, we publish 'big-data' studies from the entire spectrum of life and biomedical sciences. To achieve our goals, the journal has a novel publication format: one that links standard manuscript publication with an extensive database ([GigaDB](http://gigadb.org/)) that hosts all associated data, as well as provides data analysis tools through our [GigaGalaxy](http://galaxy.cbiit.cuhk.edu.hk/) server. Further promoting transparency in the review process, we have open review as standard for all our peer-reviewed papers.Our scope covers not just 'omic' type data and the fields of high-throughput biology currently serviced by large public repositories, but also the growing range of more difficult-to-access data, such as imaging, neuroscience, ecology, cohort data, systems biology and other new types of large-scale shareable data.
GigaScience旨在彻底改变数据传播、组织、理解和使用。作为一个在线开放获取的开放数据期刊,我们发表来自生命和生物医学科学整个领域的“大数据”研究。为实现我们的目标,该刊有一种新颖的出版格式:一个将标准手稿出版物与一个广泛的数据库([GigaDB](http://gigadb.org/))连接起来的平台,该数据库托管所有相关数据,并通过我们的[GigaGalaxy](http://galaxy.cbiit.cuhk.edu.hk/)服务器提供数据分析工具。为了进一步提高评审过程的透明度,我们将开放式评审作为所有同行评审论文的标准。我们的范围不仅涵盖“组学”类型的数据和目前由大型公共知识库提供服务的高通量生物学领域,还涵盖越来越多的更难获取的数据,如成像、神经科学、生态学、队列数据、系统生物学和其他新型的大规模可共享数据。
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
来源期刊:GigaScienceDOI:10.1093/gigascience/giy157
EEG dataset and OpenBMI toolbox for three BCI paradigms: an investigation into BCI illiteracy
来源期刊:GigaScienceDOI:10.1093/gigascience/giz002
De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
来源期刊:GigaScienceDOI:10.1093/gigascience/giz039
Computer vision-based phenotyping for improvement of plant productivity: a machine learning perspective
来源期刊:GigaScienceDOI:10.1093/gigascience/giy153
Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)
来源期刊:GigaScienceDOI:10.1093/gigascience/giz126
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
来源期刊:GigaScienceDOI:10.1093/gigascience/giz100
Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences
来源期刊:GigaScienceDOI:10.1093/gigascience/giy148
Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks
来源期刊:GigaScienceDOI:10.1093/gigascience/giz042
Molecular digitization of a botanical garden: high-depth whole-genome sequencing of 689 vascular plant species from the Ruili Botanical Garden
来源期刊:GigaScienceDOI:10.1093/gigascience/giz007
An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies
来源期刊:GigaScienceDOI:10.1093/gigascience/giz029
Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads
来源期刊:GigaScienceDOI:10.1093/gigascience/giy124
LION/web: a web-based ontology enrichment tool for lipidomic data analysis
来源期刊:GigaScienceDOI:10.1093/gigascience/giz061
Evaluation of computational genotyping of structural variation for clinical diagnoses
来源期刊:GigaScienceDOI:10.1093/gigascience/giz110
Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping
来源期刊:GigaScienceDOI:10.1093/gigascience/giz027
NanoPipe—a web server for nanopore MinION sequencing data analysis
来源期刊:GigaScienceDOI:10.1093/gigascience/giy169
PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria
来源期刊:GigaScienceDOI:10.1093/gigascience/giz119
Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear (Pyrus communis L.)
来源期刊:GigaScienceDOI:10.1093/gigascience/giz138
Pseudomolecule-level assembly of the Chinese oil tree yellowhorn (Xanthoceras sorbifolium) genome
来源期刊:GigaScienceDOI:10.1093/gigascience/giz070
A large interactive visual database of copy number variants discovered in taurine cattle
来源期刊:GigaScienceDOI:10.1093/gigascience/giz073
The genome assembly and annotation of yellowhorn (Xanthoceras sorbifolium Bunge)
来源期刊:GigaScienceDOI:10.1093/gigascience/giz071
A chromosome-scale assembly of the major African malaria vector Anopheles funestus
来源期刊:GigaScienceDOI:10.1093/gigascience/giz063
RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures
来源期刊:GigaScienceDOI:10.1093/gigascience/giz123
Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations
来源期刊:GigaScienceDOI:10.1093/gigascience/giz015
Gigwa v2—Extended and improved genotype investigator
来源期刊:GigaScienceDOI:10.1093/gigascience/giz051
De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan Province, China
来源期刊:GigaScienceDOI:10.1093/gigascience/giz085
Systematic processing of ribosomal RNA gene amplicon sequencing data
来源期刊:GigaScienceDOI:10.1093/gigascience/giz146
Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation
来源期刊:GigaScienceDOI:10.1093/gigascience/giy160
Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls
来源期刊:GigaScienceDOI:10.1093/GIGASCIENCE/GIZ040
rCASC: reproducible classification analysis of single-cell sequencing data
来源期刊:GigaScienceDOI:10.1093/gigascience/giz105
A probabilistic multi-omics data matching method for detecting sample errors in integrative analysis
来源期刊:GigaScienceDOI:10.1093/gigascience/giz080
Rice Galaxy: an open resource for plant science
来源期刊:GigaScienceDOI:10.1093/gigascience/giz028
SwiftOrtho: A fast, memory-efficient, multiple genome orthology classifier
来源期刊:GigaScienceDOI:10.1093/gigascience/giz118
Chromosomal-level reference genome of Chinese peacock butterfly (Papilio bianor) based on third-generation DNA sequencing and Hi-C analysis
来源期刊:GigaScienceDOI:10.1093/gigascience/giz128
Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
来源期刊:GigaScienceDOI:10.1093/gigascience/giz125
New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing
来源期刊:GigaScienceDOI:10.1093/gigascience/giy168
Keeping it light: (re)analyzing community-wide datasets without major infrastructure
来源期刊:GigaScienceDOI:10.1093/gigascience/giy159
Calcium imaging, MEA recordings, and immunostaining images dataset of neuron-astrocyte networks in culture under the effect of norepinephrine
来源期刊:GigaScienceDOI:10.1093/gigascience/giy161
Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome
来源期刊:GigaScienceDOI:10.1093/gigascience/giz115
DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage
来源期刊:GigaScienceDOI:10.1093/gigascience/giz025
DAISY: A Data Information System for accountability under the General Data Protection Regulation
来源期刊:GigaScienceDOI:10.1093/gigascience/giz140
Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa
来源期刊:GigaScienceDOI:10.1093/gigascience/giz147
TranscriptAchilles: a genome-wide platform to predict isoform biomarkers of gene essentiality in cancer
来源期刊:GigaScienceDOI:10.1093/gigascience/giz021
Correction to: Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning
来源期刊:GigaScienceDOI:10.1093/gigascience/giz049
OMMA enables population-scale analysis of complex genomic features and phylogenomic relationships from nanochannel-based optical maps
来源期刊:GigaScienceDOI:10.1093/gigascience/giz079
Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection
来源期刊:GigaScienceDOI:10.1093/gigascience/giz052
Dissection of soybean populations according to selection signatures based on whole-genome sequences
来源期刊:GigaScienceDOI:10.1093/gigascience/giz151
Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research
来源期刊:GigaScienceDOI:10.1093/gigascience/giz136
VAPPER: High-throughput variant antigen profiling in African trypanosomes of livestock
来源期刊:GigaScienceDOI:10.1093/gigascience/giz091
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping
来源期刊:GigaScienceDOI:10.1093/gigascience/giz088
Erratum to: A micro X-ray computed tomography dataset of South African hermit crabs (Crustacea: Decapoda: Anomura: Paguroidea) containing scans of two rare specimens and three recently described species
来源期刊:GigaScienceDOI:10.1093/gigascience/giz032