Journal of Chemical Theory and Computation 收录的论文包括量子电子结构、分子动力学和统计力学中的新理论、新方法和重要应用。期刊欢迎量子计算机及其应用的新理论,以及与化学相关的数据科学、理论和计算的结合的文章。我们也欢迎关于提出创新方法的计算化学软件包的论文。本刊不考虑已知成熟方法的直接应用的稿件,包括密度泛函理论计算和分子动力学,但鼓励那些在理论、方法或数据科学方面取得进展、并能应用于重大问题的论文。The Journal of Chemical Theory and Computation publishes papers reporting new theories, methodology in quantum electronic structure, molecular dynamics, and statistical mechanics and/or their important applications. Specific topics include advances in ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense, including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding/phase separation. New theories for quantum computers and their applications are welcome, as well as the combination of data science, theory, and computations relevant to chemistry. We also welcome papers on computational chemistry packages that present innovative methods. The Journal does not consider papers that are straightforward applications on only single-class systems of well-established methods, including DFT, traditional wave function theories, and molecular dynamics. The Journal favors submissions that include advances in theory, methodology, and data science with applications to compelling problems in chemistry and materials science.
《化学理论与计算杂志》邀请新的和原创的贡献,如果被接受,他们将不会在其他地方发表。报告量子电子结构、分子动力学和统计力学的新理论、方法和/或重要应用的论文适合提交给本杂志。具体的主题包括从头计算量子力学、密度泛函理论、新材料的设计和性质、表面科学、蒙特卡罗模拟、溶剂化模型、 QM/MM计算、生物分子结构预测和最广义的分子动力学(包括气相动力学、从头计算动力学、生物分子动力学和蛋白质折叠)的进展或应用。该杂志不考虑论文是直接应用已知的方法,包括DFT和分子动力学。《华尔街日报》倾向于提交包括理论或方法论方面的进展以及对紧迫问题的应用。
Quantum Package 2.0: An Open-Source Determinant-Driven Suite of Programs.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00176
Investigations of Stacked DNA Base-Pair Steps: Highly Accurate Stacking Interaction Energies, Energy Decomposition, and Many-Body Stacking Effects.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00643
Local Energy Decomposition of Open-Shell Molecular Systems in the Domain-Based Local Pair Natural Orbital Coupled Cluster Framework
来源期刊:Journal of Chemical Theory and ComputationDOI:10.1021/acs.jctc.8b01145
The SIRAH 2.0 Force Field: Altius, Fortius, Citius.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00006
General Purpose Water Model Can Improve Atomistic Simulations of Intrinsically Disordered Proteins.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01123
Efficient Implementation of Ab Initio Quantum Embedding in Periodic Systems: Density Matrix Embedding Theory.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00933
Intricacies of DFT+U, Not Only in a Numeric Atom Centered Orbital Framework.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01211
Investigation of the Exchange-Correlation Potentials of Functionals Based on the Adiabatic Connection Interpolation.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01037
Predicting Activity Cliffs with Free-Energy Perturbation.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01290
ωB2PLYP & ωB2GPPLYP: the first two double-hybrid density functionals with long-range correction optimized for excitation energies.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00013
Generalized Hartree-Fock with Nonperturbative Treatment of Strong Magnetic Fields: Application to Molecular Spin Phase Transitions.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01140
Outer Membrane Proteins OmpA, FhuA, OmpF, EstA, BtuB, and OmpX Have Unique Lipopolysaccharide Fingerprints.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01059
Host-Guest Relative Binding Affinities at Density-Functional Theory Level from Semiempirical Molecular Dynamics Simulations.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01280
Interactions of Water and Alkanes: Modifying Additive Force Fields to Account for Polarization Effects.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00016
Statistical Uncertainty Analysis for Small-Sample, High Log-Variance Data: Cautions for Bootstrapping and Bayesian Bootstrapping.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00015
Performance of Semilocal Kinetic Energy Functionals for Orbital-Free Density Functional Theory.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00183
Vertical Ionization Energies and Electron Affinities of Native and Damaged DNA Bases, Nucleotides, and Pairs from Density Functional Theory Calculations: Model Assessment and Implications for DNA Damage Recognition and Repair.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00645
Fully Polarizable QM/Fluctuating Charge Approach to Two-Photon Absorption of Aqueous Solutions.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00305
Self-Assembly Mechanisms of Triblock Janus Particles.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00713
Improving Vibrational Mode Interpretation Using Bayesian Regression.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00439
A heterogeneous CPU + GPU algorithm for variational two-electron reduced-density matrix driven complete active space self-consistent field theory.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00768
ReaxFF Parameter Optimization with Monte Carlo and Evolutionary Algorithms: Guidelines and Insights.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00769
Less Is More: Coarse-Grained Integrative Modeling of Large Biomolecular Assemblies with HADDOCK
来源期刊:Journal of Chemical Theory and ComputationDOI:10.1021/acs.jctc.9b00310
UV Absorption and Magnetic Circular Dichroism Spectra of Purine, Adenine, and Guanine: A Coupled Cluster Study in Vacuo and in Aqueous Solution.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00930
Iterative unbiasing of quasi-equilibrium sampling.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00907
Dynamical and Environmental Effects on the Optical Properties of an Heteroleptic Ru(II)-Polypyridine Complex: A Multilevel Approach Combining Accurate Ground and Excited State QM-Derived Force Fields, MD and TD-DFT.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01031
Cation-π Interactions between Methylated Ammonium Groups and Tryptophan in the CHARMM36 Additive Force Field.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00839
HFLD: A Non-empirical London Dispersion Corrected Hartree-Fock Method for the Quantification and Analysis of Noncovalent Interaction Energies of Large Molecular Systems.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00425
Scalable Electron Correlation Methods. 6. Local Spin-Restricted Open-Shell Second-Order Møller-Plesset Perturbation Theory Using Pair Natural Orbitals: PNO-RMP2.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01012
Characterizing protein-ligand binding using atomistic simulation and machine learning: Application to drug resistance in HIV-1 protease.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00781
A Modified Shifted Force Approach to the Wolf Summation.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00343
An Improved Lower Bound to the Ground-State Energy.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00128
EnzyDock: Protein-Ligand Docking of Multiple Reactive States Along a Reaction Coordinate in Enzymes.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00366
Defining an Optimal Metric for the Path Collective Variables.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00563
Multireference Stochastic Coupled Cluster.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00741
Three-Legged Tree Tensor Networks with SU(2) and Molecular Point Group Symmetry.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00071
Zero-Field Splitting Parameters from Four-Component Relativistic Methods.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00910
Solving the Trivial Crossing Problem While Preserving the Nodal Symmetry of the Wave Function
来源期刊:Journal of Chemical Theory and ComputationDOI:10.1021/acs.jctc.9b00302
Solvation Entropy Made Simple.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00214
Ab Initio Flexible Force Field for Metal-Organic Frameworks Using Dummy Model Coordination Bonds.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00135
Impact of Approximate DFT Density Delocalization Error on Potential Energy Surfaces in Transition Metal Chemistry.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00842
Low-cost molecular excited states from a state-averaged resonating Hartree-Fock approach.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00579
Local Embedding and Effective Downfolding in the Auxiliary-Field Quantum Monte Carlo Method.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01244
PELE-MSM: a Monte Carlo based protocol for the estimation of absolute binding free energies.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00753
Estimating Systematic Error and Uncertainty in Ab Initio Thermochemistry: I. Atomization Energies of Hydrocarbons in the ATOMIC(hc) Protocol.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00343
Free Energy Calculations Based on Coupling Proximal Distribution Functions and Thermodynamic Cycles.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01157
An Efficient Implementation of the Second-Order Quasidegenerate Perturbation Theory with Density-Fitting and Cholesky Decomposition Approximations: Is It Possible to Use Hartree-Fock Orbitals for a Multiconfigurational Perturbation Theory?
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00378
Conditional Reversible Work Coarse-Grained Models with Explicit Electrostatics-An Application to Butylmethylimidazolium Ionic Liquids.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00881
Electrostatic Potential Optimized Molecular Models (ESP-MMs) for Molecular Simulations: CO, CO2, COS, H2S, N2, N2O, and SO2.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00653
Quantitative Characterization of Protein-Lipid Interactions by Free Energy Simulation Between Binary Bilayers.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00815