The ISME Journal encompasses the breadth of microbial ecology and topics of particular concentration include, but are not limited to the integration of genomics and post-genomics approaches into studies of microbial activities, interactions and phylogeny; interactions among microorganisms and between microbes and their eukaryotic hosts, including plant, animal and human diseases and symbioses; understanding of biotic/abiotic interactions in situ and microbial drivers of biogeochemical cycles; integrated advances in environmental biotechnology; impacts of global change on microbial communities and processes; theoretical advances in microbial population and community ecology.
ISME期刊涵盖了微生物生态学的广度，特别集中的主题包括但不限于将基因组学和后基因组学方法整合到微生物活性、相互作用和系统发育的研究中;微生物之间以及微生物与其真核宿主之间的相互作用，包括植物、动物和人类疾病和共生体;了解生物/非生物原位相互作用和生物地球化学循环的微生物驱动因素;环境生物技术的综合进展;全球变化对微生物群落和过程的影响;微生物种群与群落生态学的理论进展
Bacterial persistence promotes the evolution of antibiotic resistance by increasing survival and mutation rates
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0344-9
Modelling microbiome recovery after antibiotics using a stability landscape framework
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0392-1
Convergent gain and loss of genomic islands drive lifestyle changes in plant-associated Pseudomonas
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0372-5
Metabolic regulation of the maize rhizobiome by benzoxazinoids
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0375-2
Linking the resistome and plasmidome to the microbiome
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0446-4
Rethinking gut microbiome residency and the Enterobacteriaceae in healthy human adults
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0435-7
Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0414-z
Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0346-7
Microdiversity ensures the maintenance of functional microbial communities under changing environmental conditions
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0487-8
Revisiting the ‘direct mineral cycling’ hypothesis: arbuscular mycorrhizal fungi colonize leaf litter, but why?
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0403-2
Deianiraea, an extracellular bacterium associated with the ciliate Paramecium, suggests an alternative scenario for the evolution of Rickettsiales
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0433-9
Dual RNA-seq reveals large-scale non-conserved genotype\u2009×\u2009genotype-specific genetic reprograming and molecular crosstalk in the mycorrhizal symbiosis
来源期刊：The ISME JournalDOI：10.1038/s41396-018-0342-3
Abundance and survival of microbial aerosols in the troposphere and stratosphere
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0474-0
Consistent host and organ occupancy of phyllosphere bacteria in a community of wild herbaceous plant species
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0531-8
A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0528-3
Archaeal nitrification is constrained by copper complexation with organic matter in municipal wastewater treatment plants
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0538-1
Culturing the ubiquitous freshwater actinobacterial acI lineage by supplying a biochemical ‘helper’ catalase
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0432-x
Size differences predict niche and relative fitness differences between phytoplankton species but not their coexistence
来源期刊：The ISME JournalDOI：10.1038/s41396-018-0330-7
Down to the bone: the role of overlooked endolithic microbiomes in reef coral health
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0548-z
Anaerobic hydrocarbon degradation in candidate phylum ‘Atribacteria’ (JS1) inferred from genomics
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0448-2
Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0515-8
Genetic basis for the establishment of endosymbiosis in Paramecium
来源期刊：The ISME JournalDOI：10.1038/s41396-018-0341-4
Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0557-y
Extremophilic nitrite-oxidizing Chloroflexi from Yellowstone hot springs
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0530-9
Inter-partner specificity limits the acquisition of thermotolerant symbionts in a model cnidarian-dinoflagellate symbiosis
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0429-5
Host determinants of among-species variation in microbiome composition in drosophilid flies
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0532-7
Stable aerobic and anaerobic coexistence in anoxic marine zones
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0523-8
Anaerobic degradation of xenobiotic isophthalate by the fermenting bacterium Syntrophorhabdus aromaticivorans
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0348-5
Nitric oxide production and antioxidant function during viral infection of the coccolithophore Emiliania huxleyi
来源期刊：The ISME JournalDOI：10.1038/s41396-018-0325-4
The release of a distinct cell type from swarm colonies facilitates dissemination of Vibrio parahaemolyticus in the environment
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0521-x
Host genetic effects upon the early gut microbiota in a bovine model with graduated spectrum of genetic variation
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0529-2
Ant colonies promote the diversity of soil microbial communities
来源期刊：The ISME JournalDOI：10.1038/s41396-018-0335-2
Fluid geochemistry, local hydrology, and metabolic activity define methanogen community size and composition in deep-sea hydrothermal vents
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0382-3
Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0485-x
Transient exposure to novel high temperatures reshapes coastal phytoplankton communities
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0525-6
An interspecies malate–pyruvate shuttle reconciles redox imbalance in an anaerobic microbial community
来源期刊：The ISME JournalDOI：10.1038/s41396-018-0333-4
Biodiversity of protists and nematodes in the wild nonhuman primate gut
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0551-4
Temperature-dependent changes to host–parasite interactions alter the thermal performance of a bacterial host
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0526-5
Syntrophic growth of alkaliphilic anaerobes controlled by ferric and ferrous minerals transformation coupled to acetogenesis
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0527-4
The enemy from within: a prophage of Roseburia intestinalis systematically turns lytic in the mouse gut, driving bacterial adaptation by CRISPR spacer acquisition
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0566-x
Evolutionary constraints on species diversity in marine bacterioplankton communities
来源期刊：The ISME JournalDOI：10.1038/s41396-018-0336-1
Distinct nitrogen cycling and steep chemical gradients in Trichodesmium colonies
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0514-9
Defining lower limits of biodegradation: atrazine degradation regulated by mass transfer and maintenance demand in Arthrobacter aurescens TC1
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0430-z
Air mass source determines airborne microbial diversity at the ocean–atmosphere interface of the Great Barrier Reef marine ecosystem
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0555-0
Associational effects in the microbial neighborhood
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0444-6
Drivers of human gut microbial community assembly: coadaptation, determinism and stochasticity
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0498-5
Correction: Taxonomic diversity of fungi deposited from the atmosphere
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0534-5
Host–virus–predator coexistence in a grey-box model with dynamic optimization of host fitness
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0496-7
Correction: A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.)
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0556-z
Correction: Single-cell genomics shedding light on marine Thaumarchaeota diversification
来源期刊：The ISME JournalDOI：10.1038/s41396-019-0558-x
