Published by the Microbiology Society, Microbial Genomics is a Gold Open Access, peer-reviewed journal publishing cutting edge, pioneering research into genomic approaches to microbiology, fully supported by Open Data and innovative collaborative services. We cover topics including, but not limited to: •Functional Genomics and Microbe–Niche Interactions. •Pathogens and Epidemiology. •Metagenomics and Microbiomes. •Evolution and Responses to Interventions. •Genomic Methodologies. We welcome articles showing novel insights, exciting new applications, or innovative approaches to analysis using genomic data, as well as articles developing our understanding of microbial genomics, from large, long-term studies on microbial evolution and epidemiology to studies that have immediate clinical or environmental relevance. We welcome a range of article types including Research Articles, Reviews and Technical Resources; please see the guidance on article types for more information.
Emergence, molecular mechanisms and global spread of carbapenem-resistant Acinetobacter baumannii
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000306
Pan-genome analyses of model fungal species
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000243
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000294
HomoplasyFinder: a simple tool to identify homoplasies on a phylogeny
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000245
Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000269
Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000242
Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000261
Genomic epidemiology of severe community-onset Acinetobacter baumannii infection
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000258
PANINI: Pangenome Neighbour Identification for Bacterial Populations
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000220
Genomic analysis of bacteria in the Acute Oak Decline pathobiome
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000240
Shared genome analyses of notable listeriosis outbreaks, highlighting the critical importance of epidemiological evidence, input datasets and interpretation criteria
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000237
Australian porcine clonal complex 10 (CC10) Escherichia coli belong to multiple sublineages of a highly diverse global CC10 phylogeny
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000225
An analysis of the IS6/IS26 family of insertion sequences: is it a single family?
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000291
EvoMining reveals the origin and fate of natural product biosynthetic enzymes
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000260
Domestication of Campylobacter jejuni NCTC 11168
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000279
Clonal ST131-H22 Escherichia coli strains from a healthy pig and a human urinary tract infection carry highly similar resistance and virulence plasmids
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000295
Assessing the impact, genomics and evolution of type II secretion across a large, medically important genus: the Legionella type II secretion paradigm
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000273
Genomics of vancomycin-resistant Enterococcus faecium
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000283
Population genomics of pneumococcal carriage in Massachusetts children following introduction of PCV-13
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000252
Genomic surveillance of Escherichia coli in municipal wastewater treatment plants as an indicator of clinically relevant pathogens and their resistance genes
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000267
Loss of microbial diversity and pathogen domination of the gut microbiota in critically ill patients
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000293
Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000268
Genetic affinities of an eradicated European Plasmodium falciparum strain
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000289
Using genomics to understand antimicrobial resistance and transmission in Neisseria gonorrhoeae
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000239
Quantitative real-time PCR assay for the rapid identification of the intrinsically multidrug-resistant bacterial pathogen Stenotrophomonas maltophilia
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000307
Sucrose 6F-phosphate phosphorylase: a novel insight in the human gut microbiome
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000253
Phylogenomic analysis of gastroenteritis-associated Clostridium perfringens in England and Wales over a 7-year period indicates distribution of clonal toxigenic strains in multiple outbreaks and extensive involvement of enterotoxin-encoding (CPE) plasmids
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000297
O-antigen biosynthesis gene clusters of Escherichia albertii: their diversity and similarity to Escherichia coli gene clusters and the development of an O-genotyping method
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000314
Chlamydia trachomatis: when the virulence-associated genome backbone imports a prevalence-associated major antigen signature
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000313
Genomic approaches used to investigate an atypical outbreak of Salmonella Adjame
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000248
Endemic fluoroquinolone-resistant Salmonella enterica serovar Kentucky ST198 in northern India
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000275
Comparative genome analysis of Lactobacillus mudanjiangensis, an understudied member of the Lactobacillus plantarum group
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000286
Enhancing genomics-based outbreak detection of endemic Salmonella enterica serovar Typhimurium using dynamic thresholds.
来源期刊：Microbial genomicsDOI：10.1099/mgen.0.000310
Genome-wide assessment of antimicrobial tolerance in Yersinia pseudotuberculosis under ciprofloxacin stress
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000304
A cluster of melioidosis infections in hatchling saltwater crocodiles (Crocodylus porosus) resolved using genome-wide comparison of a common north Australian strain of Burkholderia pseudomallei
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000288
Whole-genome sequencing of dog-specific assemblages C and D of Giardia duodenalis from single and pooled cysts indicates host-associated genes
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000302
Insertion sequences drive the emergence of a highly adapted human pathogen
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000265
Where the plasmids roam: large-scale sequence analysis reveals plasmids with large host ranges
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000244
Molecular characterization of respiratory syncytial viruses circulating in a paediatric cohort in Amman, Jordan.
来源期刊：Microbial genomicsDOI：10.1099/mgen.0.000292
Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000251
An in silico survey of Clostridioides difficile extrachromosomal elements\u2009\u2009\u2009
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000296
Genomic analysis of carbapenemase-producing Enterobacteriaceae in Queensland reveals widespread transmission of bla IMP-4 on an IncHI2 plasmid
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000321
Gauging the epidemic potential of a widely circulating non-invasive meningococcal strain in Africa
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000290
In praise of preprints
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000259
Complete hybrid genome assembly of clinical multidrug-resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial-resistance genes and plasmids
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000312
Next-generation sequencing of dsRNA is greatly improved by treatment with the inexpensive denaturing reagent DMSO
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000315
Co-existence of multiple distinct lineages in Vibrio parahaemolyticus serotype O4:K12.
来源期刊：Microbial genomicsDOI：10.1099/mgen.0.000287
Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000266
Cost effective, experimentally robust differential-expression analysis for human/mammalian, pathogen and dual-species transcriptomics
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000320
Genomic differences among carriage and invasive nontypeable pneumococci circulating in South Africa
来源期刊：Microbial GenomicsDOI：10.1099/mgen.0.000299
